STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2213PFAM: polysaccharide deacetylase; KEGG: amc:MADE_02597 polysaccharide deacetylase. (285 aa)    
Predicted Functional Partners:
Tter_2212
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sat:SYN_02056 DegT/DnrJ/eryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.769
Tter_2214
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rsh:Rsph17029_4153 mandelate racemase/muconate lactonizing protein.
       0.470
Tter_1844
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2008 glycosyl transferase family protein.
  
  
 0.438
Tter_2189
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: psa:PST_0048 glycosyl transferase, group 2 family protein.
  
  
 0.438
Tter_2800
PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_2352 glycosyl transferase family protein.
  
  
 0.438
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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