STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2249PFAM: LmbE family protein; KEGG: sus:Acid_6225 LmbE family protein. (272 aa)    
Predicted Functional Partners:
Tter_2248
PFAM: HEAT domain containing protein; KEGG: rpt:Rpal_4756 hypothetical protein.
  
    0.676
Tter_0621
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfu:Sfum_1980 xylose isomerase domain protein TIM barrel.
 
     0.615
Tter_2247
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sme:SM_b21355 putative oxidoreductase protein.
  
    0.582
Tter_2250
PFAM: ABC-2 type transporter; KEGG: har:HEAR2357 ABC-type drug export system, membrane protein.
       0.542
Tter_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain- containing protein.
 
     0.469
Tter_2251
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR2358 ABC-type drug export system, ATP- binding protein.
       0.466
Tter_2373
PFAM: YdjC family protein; KEGG: vfm:VFMJ11_1416 cellobiose phosphotransferase system CelC.
  
   
 0.437
Tter_2433
KEGG: bsu:BSU30250 hypothetical protein.
  
     0.432
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.