STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2254TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bha:BH1550 short chain dehydrogenase. (691 aa)    
Predicted Functional Partners:
Tter_2252
PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_3424 carbohydrate kinase, FGGY.
 
 0.958
Tter_2253
TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: acr:Acry_2987 L-rhamnose isomerase.
 
     0.941
Tter_2256
PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU1620 iron-sulfur cluster binding protein, putative.
   
   0.814
Tter_2255
PFAM: protein of unknown function DUF162; KEGG: gsu:GSU1621 hypothetical protein.
       0.800
Tter_2708
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.
 
 
 0.678
Tter_2038
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.673
Tter_2257
Hypothetical protein.
       0.508
Tter_2258
Hypothetical protein; KEGG: GF18870 gene product from transcript GF18870- RA.
       0.508
Tter_2259
Hypothetical protein.
       0.508
Tter_2251
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR2358 ABC-type drug export system, ATP- binding protein.
  
   0.428
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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