STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2272PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bha:BH0189 sorbitol dehydrogenase. (349 aa)    
Predicted Functional Partners:
Tter_2056
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: hypothetical protein; K00008 L-iditol 2- dehydrogenase.
  
  
 
0.923
Tter_0164
PFAM: ROK family protein; KEGG: sde:Sde_2639 fructokinase.
 
 
 
  0.905
xylA
KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
     
 0.905
Tter_2273
PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: kpn:KPN_02957 putative hexulose 6 phosphate synthase.
 
     0.856
Tter_2271
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0003977 putative oxidoreductase protein.
  
    0.777
Tter_2274
PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_4238 luciferase family protein.
       0.773
Tter_2270
PFAM: membrane-bound metal-dependent hydrolase.
       0.714
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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