STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2280PFAM: MMPL domain protein; KEGG: bcz:BCZK1184 transporter. (758 aa)    
Predicted Functional Partners:
Tter_2281
PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_2407 hypothetical protein.
       0.634
Tter_0991
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bcr:BCAH187_A3910 serine/threonine protein kinase.
   
 
 0.629
Tter_2279
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; tryptophan halogenase; FAD dependent oxidoreductase; HI0933 family protein; Lycopene beta and epsilon cyclase; KEGG: pna:Pnap_1343 geranylgeranyl reductase.
 
    0.619
Tter_1866
PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase.
  
     0.481
Tter_0888
PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein.
  
     0.466
Tter_2282
PFAM: protein of unknown function DUF892; KEGG: sus:Acid_5777 hypothetical protein.
       0.464
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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