STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2297PFAM: protein of unknown function DUF114; peptidase S14 ClpP; KEGG: bbt:BBta_7800 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Tter_2298
PFAM: Rhomboid family protein; KEGG: sat:SYN_00033 hypothetical protein.
 
    0.816
Tter_2296
PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dvm:DvMF_0569 chaperone DnaJ domain protein.
       0.675
Tter_2295
Transcriptional regulator, MerR family; SMART: regulatory protein MerR; KEGG: hps:HPSH_02190 putative heat shock protein (HspR).
       0.632
Tter_2299
KEGG: sus:Acid_7195 hypothetical protein.
       0.557
Tter_1554
PFAM: major facilitator superfamily MFS_1; KEGG: mno:Mnod_3105 major facilitator superfamily MFS_1.
  
     0.453
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.425
Tter_2300
KEGG: sfu:Sfum_2406 cell division inhibitor SulA.
       0.407
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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