STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2321PFAM: major facilitator superfamily MFS_1; KEGG: dal:Dalk_2314 drug resistance transporter, EmrB/QacA subfamily. (582 aa)    
Predicted Functional Partners:
Tter_2322
PFAM: regulatory protein MarR; transcriptional regulator TrmB; SMART: regulatory protein MarR; KEGG: bpt:Bpet1980 MarR family transcriptional regulator.
 
   
 0.816
Tter_2169
KEGG: bpd:BURPS668_3032 putative lipoprotein.
  
     0.667
Tter_2323
KEGG: bph:Bphy_5386 dimethylmenaquinone methyltransferase.
       0.527
Tter_2324
PFAM: glycoside hydrolase clan GH-D; KEGG: alpha-galactosidase.
       0.450
Tter_2325
PFAM: protein of unknown function DUF402.
       0.409
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.