Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2323KEGG: bph:Bphy_5386 dimethylmenaquinone methyltransferase. (247 aa)    
Predicted Functional Partners:
Tter_0186
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: scl:sce3730 acetolactate synthase.
     
  0.900
Tter_0187
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit.
     
  0.900
Tter_2355
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bce:BC5091 SnoK-like protein.
  
     0.702
Tter_2324
PFAM: glycoside hydrolase clan GH-D; KEGG: alpha-galactosidase.
       0.658
Tter_2648
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase; KEGG: mgm:Mmc1_2016 helicase domain protein.
    
 
 0.635
Tter_2325
PFAM: protein of unknown function DUF402.
       0.589
Tter_2744
KEGG: hypothetical protein.
  
     0.560
Tter_0309
PFAM: extracellular solute-binding protein family 5; KEGG: smd:Smed_5555 extracellular solute-binding protein family 5.
  
     0.542
Tter_1805
PFAM: extracellular solute-binding protein family 5; KEGG: oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein.
  
     0.542
Tter_1927
PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000423 probable oligopeptide ABC transporter, substrate-binding protein.
  
     0.528
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.