STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2325PFAM: protein of unknown function DUF402. (219 aa)    
Predicted Functional Partners:
Tter_2324
PFAM: glycoside hydrolase clan GH-D; KEGG: alpha-galactosidase.
 
     0.750
Tter_2323
KEGG: bph:Bphy_5386 dimethylmenaquinone methyltransferase.
       0.589
Tter_2101
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase.
  
     0.578
Tter_2786
PFAM: regulatory protein TetR; KEGG: cak:Caul_4437 TetR family transcriptional regulator.
  
     0.576
Tter_2322
PFAM: regulatory protein MarR; transcriptional regulator TrmB; SMART: regulatory protein MarR; KEGG: bpt:Bpet1980 MarR family transcriptional regulator.
 
     0.504
Tter_0116
PFAM: Hyaluronidase; KEGG: Hyaluronidase family protein.
  
     0.491
Tter_2012
PFAM: ferric iron reductase; KEGG: pmy:Pmen_2861 ferric iron reductase.
  
     0.475
Tter_1095
PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter.
  
     0.455
Tter_2402
PFAM: glycoside hydrolase family 76; KEGG: hypothetical protein.
  
     0.443
Tter_2530
PFAM: glycoside hydrolase family 39; KEGG: cak:Caul_3132 xylan 1,4-beta-xylosidase.
  
     0.433
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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