STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2336PFAM: alpha-L-rhamnosidase; KEGG: sus:Acid_3742 alpha-L-rhamnosidase. (796 aa)    
Predicted Functional Partners:
Tter_2666
KEGG: atc:AGR_L_146 hypothetical protein.
 
    0.749
Tter_0622
KEGG: smd:Smed_2312 hypothetical protein.
 
     0.717
Tter_2708
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.
 
     0.699
Tter_1907
KEGG: hypothetical protein.
 
    0.697
Tter_0211
PFAM: protein of unknown function DUF608; KEGG: sus:Acid_5570 hypothetical protein.
  
  
 0.685
Tter_2468
PFAM: protein of unknown function DUF608; KEGG: sus:Acid_5570 hypothetical protein.
  
  
 0.680
Tter_0878
KEGG: alpha-glucan phosphorylase; K00688 starch phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 
 0.660
Tter_1903
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: rle:pRL100274 putative fucosidase.
  
     0.610
Tter_2312
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: xcv:XCV3207 alpha-L-fucosidase.
  
     0.608
Tter_2195
PFAM: glycoside hydrolase family 5; KEGG: aba:Acid345_1689 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
    0.601
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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