STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tter_2362PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dps:DP3099 hypothetical protein. (287 aa)    
Predicted Functional Partners:
Tter_2363
PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: aba:Acid345_2653 putative GAF sensor protein.
       0.773
Tter_2364
Hypothetical protein; KEGG: bxe:Bxe_A4325 putative hemagglutinin-related transmembrane protein.
       0.773
Tter_2365
PFAM: FAD dependent oxidoreductase; KEGG: predicted protein; K00109 2-hydroxyglutarate dehydrogenase.
       0.527
Tter_1490
ResB-like protein required for cytochrome c biosynthesis; KEGG: gsu:GSU0613 ResB-like family protein.
  
  
 0.505
Tter_0238
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_2302 cytochrome c assembly protein.
  
  
 0.500
Tter_1491
PFAM: cytochrome c assembly protein; KEGG: ccsA; cytochrome c biogenesis protein.
  
  
 0.500
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
      
 0.416
Tter_2391
PFAM: Resolvase domain; KEGG: mgm:Mmc1_2926 resolvase, N-terminal domain.
   
    0.414
Tter_1733
PFAM: DSBA oxidoreductase; KEGG: mxa:MXAN_3206 DsbA-like thioredoxin domain protein.
 
   
 0.410
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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