STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2396PFAM: SMP-30/Gluconolaconase/LRE domain protein; Strictosidine synthase; NHL repeat containing protein; KEGG: bbr:BB0722 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Tter_0416
PFAM: carbohydrate kinase FGGY; KEGG: bat:BAS3177 gluconate kinase.
  
 
 0.906
Tter_0157
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_2336 short-chain dehydrogenase/reductase SDR.
  
 
 0.905
Tter_2119
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_7577 glucose 1-dehydrogenase.
  
 
 0.905
Tter_2361
PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: bmj:BMULJ_02351 glucose 1-dehydrogenase.
  
 
 0.905
Tter_2355
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bce:BC5091 SnoK-like protein.
  
    0.569
Tter_2397
PFAM: protein of unknown function DUF488; KEGG: gsu:GSU3442 hypothetical protein.
       0.548
Tter_2398
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6967 ABC transporter related.
       0.548
Tter_2399
PFAM: ABC-2 type transporter; KEGG: aba:Acid345_0285 ABC multidrug efflux pump, inner membrane subunit.
       0.548
Tter_1958
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: sus:Acid_5866 dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.484
Tter_1946
PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to phytanoyl-CoA hydroxylase (Refsum disease).
  
    0.483
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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