STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2405KEGG: ade:Adeh_0026 hypothetical protein. (376 aa)    
Predicted Functional Partners:
Tter_2165
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.529
Tter_2714
PFAM: major facilitator superfamily MFS_1; KEGG: ank:AnaeK_3300 major facilitator superfamily MFS_1.
  
     0.521
Tter_1564
TIGRFAM: M6 family metalloprotease domain protein; PFAM: peptidase M6 immune inhibitor A; KEGG: acp:A2cp1_0344 M6 family metalloprotease domain protein.
  
     0.517
Tter_0532
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bsu:BSU06300 spore coat protein (outer).
  
   
 0.470
Tter_2715
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.467
Tter_2408
Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: ppw:PputW619_2280 AAA ATPase.
 
     0.459
Tter_2861
PFAM: bifunctional deaminase-reductase domain protein; KEGG: smd:Smed_5058 bifunctional deaminase- reductase domain protein.
 
     0.458
Tter_2404
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: gme:Gmet_0751 peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.427
Tter_2406
PFAM: protein of unknown function DUF1058; KEGG: bcn:Bcen_4232 SH3, type 3.
       0.422
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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