STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2408Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: ppw:PputW619_2280 AAA ATPase. (1428 aa)    
Predicted Functional Partners:
Tter_1639
PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: bha:BH2516 fibronectin/fibrinogen-binding protein.
 
    0.756
Tter_1391
Putative transcriptional regulator; PFAM: AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: xca:xccb100_0556 hypothetical protein.
 
    0.713
Tter_1525
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ccs:CCNA_01359 myo-inositol catabolism protein IolB.
   
    0.686
Tter_2715
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.639
Tter_1960
Hypothetical protein; KEGG: rfr:Rfer_1106 glycoside hydrolase family protein.
  
    0.635
Tter_1411
PFAM: peptidase A24A prepilin type IV; KEGG: ank:AnaeK_0671 peptidase A24A domain protein.
  
     0.524
Tter_2407
KEGG: NHL repeat containing protein.
       0.515
Tter_2409
Hypothetical protein.
       0.514
Tter_2405
KEGG: ade:Adeh_0026 hypothetical protein.
 
     0.459
Tter_0637
PFAM: sodium/calcium exchanger membrane region; KEGG: dvm:DvMF_1109 sodium/calcium exchanger membrane region.
  
     0.451
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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