STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2411PFAM: YHS domain protein; SMART: TRASH domain protein; KEGG: sfu:Sfum_2247 efflux transporter, RND family, MFP subunit. (56 aa)    
Predicted Functional Partners:
Tter_2842
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mxa:MXAN_3480 iron-sulfur cluster-binding protein, Rieske family.
   
   0.587
Tter_1196
PFAM: Rieske [2Fe-2S] domain protein; KEGG: scl:sce7049 hypothetical protein.
   
   0.579
Tter_1694
PFAM: Rieske [2Fe-2S] domain protein; KEGG: ypk:y3312 hypothetical protein.
   
   0.579
Tter_2410
KEGG: scl:sce1162 hypothetical protein.
       0.521
Tter_2238
PFAM: multicopper oxidase type 3; multicopper oxidase type 1; blue (type 1) copper domain protein; multicopper oxidase type 2; KEGG: hypothetical protein.
     
 0.506
Tter_1730
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sat:SYN_01290 copper-exporting ATPase.
     
 0.446
Tter_2465
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: nha:Nham_4423 heavy metal translocating P- type ATPase.
     
 0.446
Tter_1798
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr4464 ABC transporter integral membrane protein.
  
    0.414
Tter_2412
KEGG: scl:sce8190 hypothetical protein.
       0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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