STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2433KEGG: bsu:BSU30250 hypothetical protein. (345 aa)    
Predicted Functional Partners:
Tter_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain- containing protein.
  
     0.652
Tter_0621
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfu:Sfum_1980 xylose isomerase domain protein TIM barrel.
  
     0.625
Tter_0323
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ypk:y0252 hypothetical protein.
  
     0.617
Tter_1909
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein.
  
     0.548
Tter_2318
KEGG: sus:Acid_1828 hypothetical protein.
  
     0.538
Tter_2666
KEGG: atc:AGR_L_146 hypothetical protein.
  
     0.536
Tter_1907
KEGG: hypothetical protein.
  
     0.532
Tter_2432
PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: vfm:VFMJ11_A0662 topoisomerase-associated Zn- finger domain protein.
       0.521
Tter_1112
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1902 xylose isomerase domain- containing protein.
  
     0.517
Tter_1113
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_3552 hypothetical protein.
  
     0.496
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.