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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2443PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gme:Gmet_2237 methylmalonyl-CoA epimerase. (150 aa)    
Predicted Functional Partners:
Tter_1623
TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gme:Gmet_3253 methylmalonyl-CoA epimerase.
 
  
 0.953
Tter_1673
PFAM: cobalamin B12-binding domain protein; KEGG: ade:Adeh_1832 methylmalonyl-CoA mutase.
    
 0.908
Tter_1619
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: rec:RHECIAT_CH0003763 probable biotin carboxylase protein.
  
 
 0.906
Tter_1622
KEGG: gsu:GSU3302 methylmalonyl-CoA mutase, putative; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
    
 0.905
Tter_1672
methylmalonyl-CoA mutase, large subunit; KEGG: sus:Acid_6472 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
    
 0.905
Tter_2442
PFAM: aldo/keto reductase; KEGG: bja:blr7422 oxidoreductase.
  
    0.589
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.527
Tter_2444
SMART: PDZ/DHR/GLGF domain protein; KEGG: ank:AnaeK_0901 PDZ/DHR/GLGF domain protein.
  
    0.525
Tter_2445
PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: rso:RSc1058 periplasmic protease signal peptide protein.
  
    0.525
Tter_2446
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: acp:A2cp1_0906 transcriptional regulator, LuxR family.
       0.517
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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