STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2503PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: mes:Meso_1093 transcriptional regulator, LacI family. (337 aa)    
Predicted Functional Partners:
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
    
 
 0.719
Tter_2502
PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_1094 extracellular solute-binding protein, family 1.
 
     0.627
Tter_2504
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 hypothetical protein.
       0.490
Tter_2501
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1095 binding-protein-dependent transport systems inner membrane component.
       0.463
Tter_2505
Hypothetical protein.
       0.462
Tter_2500
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1096 binding-protein-dependent transport systems inner membrane component.
       0.422
Tter_2506
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20970 putative sugar uptake ABC transporter permease protein.
       0.408
Tter_2507
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20969 putative sugar uptake ABC transporter permease protein.
       0.408
Tter_2499
PFAM: ADP-ribosylation/Crystallin J1; KEGG: mes:Meso_1097 hypothetical protein.
       0.407
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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