STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2559PFAM: UspA domain protein; KEGG: ade:Adeh_1445 universal stress protein UspA. (295 aa)    
Predicted Functional Partners:
Tter_2560
PFAM: UspA domain protein; KEGG: neu:NE1201 universal stress protein.
 
     0.862
Tter_2567
PFAM: UspA domain protein; KEGG: net:Neut_1753 UspA domain-containing protein.
  
     0.767
Tter_2547
PFAM: UspA domain protein; KEGG: sfu:Sfum_0641 UspA domain protein.
  
     0.764
Tter_2569
PFAM: UspA domain protein; KEGG: neu:NE1201 universal stress protein.
  
     0.758
Tter_1584
PFAM: UspA domain protein; KEGG: sfu:Sfum_0641 UspA domain protein.
  
     0.754
Tter_2546
PFAM: UspA domain protein; KEGG: net:Neut_1753 UspA domain-containing protein.
  
     0.754
Tter_2561
KEGG: ajs:Ajs_2159 hypothetical protein.
       0.624
Tter_2562
Flavodoxin-like protein; KEGG: pmu:PM1499 protoporphyrinogen oxidase.
       0.624
Tter_2558
PFAM: protein of unknown function DUF125 transmembrane; KEGG: rde:RD1_0286 hypothetical protein.
       0.576
Tter_2563
Multi-sensor signal transduction histidine kinase; KEGG: scl:sce5445 protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein.
     
 0.452
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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