Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2580PFAM: protein of unknown function DUF305; KEGG: scl:sce8098 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Tter_2582
PFAM: protein of unknown function DUF156; KEGG: mno:Mnod_0212 protein of unknown function DUF156.
       0.649
Tter_2581
Hypothetical protein.
       0.596
Tter_2583
PFAM: Heavy metal transport/detoxification protein; KEGG: hypothetical protein; K01533 Cu2+-exporting ATPase.
  
    0.440
Tter_2584
TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afw:Anae109_1015 copper-translocating P-type ATPase.
  
  
 0.439
Tter_1875
Hypothetical protein.
  
     0.411
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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