STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2596PFAM: protein of unknown function DUF296; KEGG: sus:Acid_2608 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Tter_2595
PFAM: ADP-ribosylation/Crystallin J1; KEGG: sec:SC3958 putative ADP-ribosylglycohydrolase.
       0.773
Tter_2594
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bcz:pE33L466_0386 methyltransferase.
       0.554
Tter_1311
PFAM: selenium-binding protein; KEGG: rde:RD1_2378 selenium binding protein.
  
     0.452
Tter_0151
PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A1795 phosphoheptose isomerase.
  
     0.421
Tter_2620
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.400
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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