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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2610PFAM: sulfatase; KEGG: sus:Acid_6855 sulfatase. (477 aa)    
Predicted Functional Partners:
Tter_2608
PFAM: ABC-2 type transporter; KEGG: bba:Bd1727 ABC transporter, permease protein, putative.
       0.564
Tter_2607
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cak:Caul_1797 NAD-dependent epimerase/dehydratase.
       0.556
Tter_2609
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_01205 ABC transporter ATP-binding protein.
       0.556
Tter_2611
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcy:Bcer98_0557 MarR family transcriptional regulator.
       0.533
Tter_2612
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcu:BCAH820_0720 putative multidrug resistance protein.
      0.502
Tter_2447
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: hypothetical protein; K01195 beta- glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.479
Tter_2254
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bha:BH1550 short chain dehydrogenase.
  
 
 0.420
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.414
Tter_2461
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sew:SeSA_A3313 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.413
Tter_0430
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: rle:pRL90127 putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.403
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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