STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2656PFAM: ROK family protein; KEGG: bha:BH2758 transcriptional repressor of the xylose operon. (418 aa)    
Predicted Functional Partners:
Tter_0465
PFAM: mannose-6-phosphate isomerase type I; KEGG: aba:Acid345_0569 mannose-6-phosphate isomerase.
 
  
 0.654
Tter_2657
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL2327 putative transmembrane component of ABC transporter.
       0.551
Tter_2658
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu3238 ABC transporter, membrane spanning protein (sugar).
       0.544
Tter_2655
Hypothetical protein.
       0.500
Tter_2659
PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_3985 putative ABC sugar transporter (substrate binding protein).
  
    0.445
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
  
  
 0.413
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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