STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2673PFAM: ABC transporter related; LytTr DNA-binding region; SMART: AAA ATPase; KEGG: bce:BC5286 transcriptional regulator. (330 aa)    
Predicted Functional Partners:
Tter_2671
PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0811 hypothetical protein.
 
     0.845
Tter_0482
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_2797 ABC transporter, ATPase subunit.
 
    0.719
Tter_1773
KEGG: bha:BH1004 hypothetical protein.
 
     0.694
Tter_2672
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_3803 ABC transporter-related protein.
 
   
0.627
cysS-3
KEGG: bph:Bphy_6692 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; glycosyl transferase family 2; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family.
 
   
 0.564
Tter_2675
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: vei:Veis_4212 thiamine pyrophosphate enzyme TPP binding domain protein; Belongs to the TPP enzyme family.
     
 0.558
Tter_2674
PFAM: cyclase family protein; KEGG: plu:plu1439 hypothetical protein.
       0.545
Tter_1877
PFAM: protein of unknown function DUF87; KEGG: efe:EFER_3096 putative nucleoside triphosphate hydrolase.
  
     0.523
Tter_2194
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
  
  
 0.500
Tter_2710
KEGG: gsu:GSU0719 hypothetical protein.
  
     0.497
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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