STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2677TIGRFAM: DNA binding domain protein, excisionase family; KEGG: pau:PA14_15570 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Tter_0221
PFAM: polysaccharide biosynthesis protein; KEGG: bat:BAS4308 stage V sporulation protein B.
  
     0.703
Tter_2676
Hypothetical protein.
       0.686
Tter_1334
PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit.
  
     0.597
Tter_0254
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: nis:NIS_1151 bacterioferritin.
  
     0.552
Tter_2678
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_2092 two component, sigma54 specific, transcriptional regulator, fis family.
       0.475
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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