STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2688PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cvi:CV_1323 hydrolase/nitrilase. (334 aa)    
Predicted Functional Partners:
Tter_0266
PFAM: Spermine synthase; KEGG: ade:Adeh_3062 spermine synthase.
  
 
 0.919
Tter_2687
PFAM: beta-lactamase domain protein; KEGG: glo:Glov_3342 beta-lactamase domain protein.
       0.774
Tter_2686
PFAM: sugar isomerase (SIS); KEGG: sus:Acid_1598 glutamine--fructose-6-phosphate transaminase (isomerizing).
  
  
 0.590
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
 
 0.514
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.411
Tter_1717
TIGRFAM: L-lysine 6-transaminase; PFAM: aminotransferase class-III; KEGG: dps:DP2333 L-lysine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.404
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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