STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2698PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (390 aa)    
Predicted Functional Partners:
Tter_0164
PFAM: ROK family protein; KEGG: sde:Sde_2639 fructokinase.
     
  0.800
Tter_1479
Endo-1,4-beta-xylanase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.717
Tter_2588
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: similar to beta-mannosidase; K01192 beta- mannosidase.
 
     0.649
Tter_2696
PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sus:Acid_3915 glucosamine-6-phosphate deaminase.
       0.576
Tter_2697
PFAM: amidohydrolase; KEGG: sus:Acid_5572 N-acetylglucosamine 6-phosphate deacetylase.
       0.576
Tter_1773
KEGG: bha:BH1004 hypothetical protein.
  
     0.511
Tter_2671
PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0811 hypothetical protein.
  
     0.433
Tter_2695
TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; KEGG: gsu:GSU2749 NOL1/NOP2/sun family protein.
       0.424
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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