STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2704TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; KEGG: sat:SYN_01023 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (397 aa)    
Predicted Functional Partners:
Tter_0693
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     0.893
Tter_2705
PFAM: protein of unknown function DUF955; KEGG: mgm:Mmc1_3288 protein of unknown function DUF955.
       0.618
Tter_2703
PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1762 hypothetical protein.
       0.531
Tter_1813
Hypothetical protein.
  
     0.495
Tter_0594
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2545 ABC transporter-related protein.
 
    0.485
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.468
Tter_1187
PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: scl:sce8634 bifunctional homocysteine S- methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
     
 0.423
Tter_2701
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bba:Bd1226 maltose/maltodextrin ABC transporter permease.
       0.412
Tter_2702
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1761 hypothetical protein.
       0.412
Tter_1350
PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: mxa:MXAN_3793 30S ribosomal protein S1.
  
    0.405
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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