STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2769PFAM: bifunctional deaminase-reductase domain protein; KEGG: bcb:BCB4264_A3191 riboflavin biosynthesis protein RibD C-domain protein. (180 aa)    
Predicted Functional Partners:
Tter_2770
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: bcr:BCAH187_A4779 hypothetical protein.
 
     0.846
Tter_2861
PFAM: bifunctional deaminase-reductase domain protein; KEGG: smd:Smed_5058 bifunctional deaminase- reductase domain protein.
  
     0.741
Tter_2860
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMa2267 hypothetical protein.
 
  
 0.532
Tter_2165
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.482
Tter_0579
KEGG: aba:Acid345_0083 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: protein of unknown function DUF198; 78- dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK.
     
 0.478
Tter_2751
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bmn:BMA10247_A1223 3-demethylubiquinone-9 3- methyltransferase family protein.
 
    0.474
Tter_2620
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.443
Tter_1187
PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: scl:sce8634 bifunctional homocysteine S- methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
     
 0.420
Tter_2728
KEGG: afw:Anae109_3510 hypothetical protein.
 
  
 0.415
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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