STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2827KEGG: mlo:mll5255 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Tter_2826
PFAM: asparagine synthase; KEGG: mlo:mll5256 asparagine synthetase.
 
     0.909
Tter_2832
KEGG: mca:MCA0892 hypothetical protein.
 
     0.833
Tter_2793
KEGG: ppd:Ppro_0062 hypothetical protein.
  
     0.740
Tter_2829
PFAM: asparagine synthase; KEGG: mlo:mll5256 asparagine synthetase.
 
     0.734
Tter_2825
PFAM: Methyltransferase type 12; Methyltransferase type 11; Tetratricopeptide TPR_4; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: lch:Lcho_4081 methyltransferase type 12.
       0.723
Tter_1153
PFAM: asparagine synthase; KEGG: mlo:mll5256 asparagine synthetase.
  
     0.479
Tter_2830
HPr kinase; KEGG: rde:RD1_3848 hypothetical protein.
 
    
0.420
Tter_2828
Hypothetical protein.
       0.418
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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