STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_2856PFAM: NUDIX hydrolase; KEGG: bbt:BBta_3942 putative NUDIX-like hydrolase; Belongs to the Nudix hydrolase family. (155 aa)    
Predicted Functional Partners:
Tter_1044
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bat:BAS4827 phosphatase; Belongs to the HAD-like hydrolase superfamily.
      0.902
Tter_2857
KEGG: scl:sce1090 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.782
Tter_1416
PFAM: NUDIX hydrolase; KEGG: hch:HCH_10012 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.
  
     0.748
Tter_1061
PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_7192 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family.
  
     0.703
Tter_0618
PFAM: NUDIX hydrolase; KEGG: sme:SMc02711 hypothetical protein.
  
     0.667
Tter_2854
PFAM: protein of unknown function DUF1648; KEGG: bcr:BCAH187_A4974 conserved membrane protein YvaZ.
       0.542
Tter_2855
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ccs:CCNA_03123 transcriptional regulator, ArsR family.
       0.542
Tter_2858
Hypothetical protein.
       0.467
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.422
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.