STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0007Hypothetical protein; KEGG: glycosyl hydrolase, family 18, putative; K01183 chitinase. (328 aa)    
Predicted Functional Partners:
Afer_0008
PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase.
       0.773
Afer_0006
KEGG: chy:CHY_2704 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A.
       0.618
Afer_0005
KEGG: ace:Acel_0005 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein.
       0.538
Afer_0009
Hypothetical protein.
       0.529
Afer_0010
Hypothetical protein.
       0.529
Afer_0011
Hypothetical protein; KEGG: GK18624.
       0.529
Afer_0012
Hypothetical protein.
       0.529
Afer_0013
Hypothetical protein; KEGG: saq:Sare_5011 Na+/solute symporter.
       0.529
Afer_0014
Hypothetical protein.
       0.529
Afer_0015
Hypothetical protein; KEGG: cak:Caul_4339 peptidase M28.
       0.529
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.