STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0024PFAM: histone deacetylase superfamily; KEGG: sul:SYO3AOP1_1212 histone deacetylase superfamily. (343 aa)    
Predicted Functional Partners:
Afer_1396
PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein.
    
 0.927
Afer_1888
KEGG: art:Arth_4271 hypothetical protein.
    
 
 0.815
Afer_0023
TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: sgr:SGR_3683 putative RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.796
Afer_0167
PFAM: phosphoribulokinase/uridine kinase; KEGG: gvi:glr4424 phosphoribulokinase.
   
 0.709
Afer_0258
KEGG: cef:CE1107 hypothetical protein.
    
  0.695
Afer_1507
PFAM: SMC domain protein; KEGG: sen:SACE_6071 chromosome segregation ATPase.
   
 0.657
Afer_0483
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pto:PTO1077 protease I.
   
  0.638
Afer_0896
PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; KEGG: stp:Strop_1906 tetratricopeptide TPR_4.
   
 0.605
Afer_0025
PFAM: GCN5-related N-acetyltransferase; KEGG: cau:Caur_1705 GCN5-related N- acetyltransferase.
     
 0.562
Afer_0026
Hypothetical protein; KEGG: GF17743 gene product from transcript GF17743- RA.
       0.553
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.