STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0073PFAM: peptidase C60 sortase A and B; KEGG: met:M446_5133 peptidase C60 sortase A and B. (320 aa)    
Predicted Functional Partners:
Afer_0463
Hypothetical protein; KEGG: ace:Acel_1450 RND family efflux transporter MFP subunit.
  
     0.661
Afer_1645
PFAM: protein of unknown function DUF165; KEGG: kra:Krad_4383 hypothetical protein.
  
     0.637
Afer_0664
KEGG: chy:CHY_1117 ISChy4, transposase.
  
     0.590
Afer_1986
PFAM: Ig family protein; KEGG: sus:Acid_0470 Ig family protein.
 
     0.509
Afer_1523
PFAM: Cytochrome b/b6 domain; KEGG: ace:Acel_1781 hypothetical protein.
  
     0.497
Afer_0999
Hypothetical protein; KEGG: nca:Noca_3830 ferric reductase domain- containing protein.
  
     0.442
Afer_1181
PFAM: amino acid permease-associated region; KEGG: afe:Lferr_0867 amino acid permease-associated region.
  
     0.419
Afer_0229
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_7066 integral membrane protein.
  
     0.413
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.