STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0076PFAM: Pyridoxal-dependent decarboxylase; KEGG: fra:Francci3_0279 pyridoxal-dependent decarboxylase. (458 aa)    
Predicted Functional Partners:
Afer_0700
PFAM: aminotransferase class-III; KEGG: rca:Rcas_3219 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.921
Afer_0941
PFAM: aminotransferase class-III; KEGG: sen:SACE_3418 aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.919
Afer_1662
PFAM: aminotransferase class-III; KEGG: art:Arth_1499 acetylornithine and succinylornithine aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
  
 0.899
Afer_0077
PFAM: histidine triad (HIT) protein; KEGG: pna:Pnap_4872 histidine triad (HIT) protein.
       0.777
Afer_0575
PFAM: aminotransferase class-III; KEGG: ace:Acel_1287 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     0.709
Afer_0074
PFAM: Patatin; KEGG: mmi:MMAR_2150 alpha-beta hydrolase superfamily esterase.
 
     0.609
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
  
 
 0.570
Afer_0075
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein Crp; SMART: regulatory protein MarR; KEGG: esi:Exig_2989 MarR family transcriptional regulator.
       0.542
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.522
Afer_1988
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit.
     
 0.521
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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