STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0078PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: saq:Sare_2891 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (401 aa)    
Predicted Functional Partners:
Afer_1405
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cma:Cmaq_0486 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
0.934
Afer_0163
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lbf:LBF_2704 NADH dehydrogenase.
 
 
0.916
Afer_1495
PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: kra:Krad_1362 Cys/Met metabolism pyridoxal- phosphate-dependent protein.
  
 
 0.904
Afer_0269
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rxy:Rxyl_0463 pyridoxal-5'-phosphate- dependent enzyme, beta subunit.
     
 0.902
Afer_1336
TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fal:FRAAL3350 subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.902
Afer_1377
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dar:Daro_0368 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
  
 
 0.721
Afer_0080
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nca:Noca_1946 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.567
Afer_1988
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit.
     
 0.537
Afer_1684
PFAM: Lumazine-binding protein; KEGG: tfu:Tfu_1078 riboflavin synthase subunit alpha.
   
    0.533
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.533
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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