STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0118KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein. (239 aa)    
Predicted Functional Partners:
Afer_1205
KEGG: sco:SCO4586 ABC transporter integral membrane protein.
 
 
 0.748
Afer_1037
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein ArsR; SMART: regulatory protein MarR; KEGG: rsa:RSal33209_0720 MarR family transcriptional regulator.
  
   
 0.633
Afer_1637
PFAM: protein of unknown function DUF1707; KEGG: sco:SCO2893 hypothetical protein.
  
     0.579
Afer_2029
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: kra:Krad_1516 ABC transporter-related protein.
 
 0.572
Afer_1789
PFAM: regulatory protein TetR; KEGG: sgr:SGR_6910 TetR family transcriptional regulator.
 
     0.566
Afer_0776
PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein.
  
     0.546
Afer_1851
PFAM: regulatory protein TetR; KEGG: msm:MSMEG_5282 transcriptional regulator.
 
     0.538
Afer_0879
PFAM: PTS system fructose subfamily IIA component; KEGG: rsa:RSal33209_3182 dihydroxyacetone kinase phosphotransfer protein.
  
     0.509
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
  
     0.503
Afer_2000
PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_6701 amino acid permease.
  
   0.477
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.