STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0123TIGRFAM: carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: afe:Lferr_1385 carboxysome peptide A. (83 aa)    
Predicted Functional Partners:
Afer_0124
PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A.
 
 
 
 0.956
Afer_0125
PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A.
 
 
 
 0.951
Afer_0122
TIGRFAM: carboxysome shell carbonic anhydrase; KEGG: afe:Lferr_1386 carboxysome shell carbonic anhydrase.
 
     0.950
Afer_0126
PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A.
 
 
 
 0.947
Afer_0121
KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2.
 
     0.930
Afer_0120
PFAM: ribulose bisphosphate carboxylase small chain; KEGG: afe:Lferr_1388 ribulose-bisphosphate carboxylase.
 
 
 
 0.786
Afer_0127
PFAM: Ferritin Dps family protein; KEGG: afe:Lferr_1380 ferritin Dps family protein.
 
     0.748
Afer_0129
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase.
 
   
 0.659
Afer_0133
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: afe:Lferr_1358 hypothetical protein.
 
   
 0.580
Afer_0119
PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit- like; KEGG: afe:Lferr_1389 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
   
 0.545
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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