Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0132PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: afe:Lferr_1375 von Willebrand factor type A. (781 aa)    
Predicted Functional Partners:
Afer_0131
PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: afe:Lferr_1376 CbbQ/NirQ/NorQ domain protein.
 
 
 0.983
Afer_0120
PFAM: ribulose bisphosphate carboxylase small chain; KEGG: afe:Lferr_1388 ribulose-bisphosphate carboxylase.
 
   
 0.777
Afer_0783
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: sma:SAV_1448 MoxR-like ATPase.
  
 
 0.735
Afer_1567
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 MoxR family ATPase.
  
 
 0.735
Afer_0122
TIGRFAM: carboxysome shell carbonic anhydrase; KEGG: afe:Lferr_1386 carboxysome shell carbonic anhydrase.
 
   
 0.615
Afer_0129
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase.
 
     0.582
Afer_0121
KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2.
 
   
 0.581
Afer_0119
PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit- like; KEGG: afe:Lferr_1389 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
   
 0.571
Afer_0127
PFAM: Ferritin Dps family protein; KEGG: afe:Lferr_1380 ferritin Dps family protein.
       0.523
Afer_0126
PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A.
     
 0.507
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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