STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0143KEGG: rci:RRC32 hypothetical protein. (462 aa)    
Predicted Functional Partners:
Afer_0137
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
       0.773
Afer_0138
TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: ace:Acel_0842 flagellar motor switch protein FliG.
       0.773
Afer_0139
Hypothetical protein; KEGG: dau:Daud_1763 flagellar biosynthesis/type III secretory pathway protein-like protein.
       0.773
Afer_0140
ATPase, FliI/YscN family; KEGG: ace:Acel_0844 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.
       0.773
Afer_0141
KEGG: rpt:Rpal_3033 hypothetical protein.
       0.773
Afer_0142
PFAM: NLP/P60 protein; Lytic transglycosylase catalytic; Transglycosylase domain protein; KEGG: ace:Acel_0846 lytic transglycosylase, catalytic.
       0.773
Afer_0134
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
       0.752
Afer_0135
PFAM: protein of unknown function DUF1078 domain protein; KEGG: kra:Krad_1648 hypothetical protein; Belongs to the flagella basal body rod proteins family.
       0.752
Afer_0136
PFAM: flagellar hook-basal body complex protein FliE; KEGG: ace:Acel_0840 flagellar hook-basal body complex subunit FliE.
       0.752
Afer_0144
PFAM: flagellar hook capping protein; KEGG: rpc:RPC_0870 flagellar hook capping protein.
       0.689
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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