STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0171PFAM: extracellular solute-binding protein family 5; KEGG: lxx:Lxx23050 ABC transporter, substrate binding protein. (540 aa)    
Predicted Functional Partners:
Afer_0172
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_6552 putative oligopeptide/dipeptide ABC transporter, permease protein.
 
 
 0.944
Afer_0173
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx23070 ABC transporter, permease protein.
 
 
 0.935
Afer_0175
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6554 oligopeptide/dipeptide ABC transporter, ATP-binding protein.
  
 0.847
Afer_0174
KEGG: reh:H16_A1303 ABC-type transporter, ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.813
Afer_0170
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: xca:xccb100_4166 exported xylan 1,4-beta- xylosidase.
 
     0.573
Afer_0176
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_1827 LysR family transcriptional regulator.
       0.514
Afer_0169
KEGG: sgr:SGR_2421 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
  
    0.485
Afer_0887
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6113 peptide ABC transporter integral membrane protein.
  
 
 0.447
Afer_1142
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4337 binding-protein-dependent transport systems inner membrane component.
  
 
 0.447
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.