Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Afer_0183PFAM: Transglycosylase domain protein; KEGG: fre:Franean1_0215 transglycosylase domain- containing protein. (325 aa)    
Predicted Functional Partners:
Afer_1915
KEGG: kra:Krad_0528 hypothetical protein.
  
     0.644
Afer_0670
KEGG: tfu:Tfu_0325 hypothetical protein.
  
     0.575
Afer_0283
KEGG: mab:MAB_2457c hypothetical protein.
  
     0.560
Afer_1742
TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; Two component regulator propeller; KEGG: ace:Acel_0423 SpoIID/LytB domain-containing protein.
  
  
 0.542
Afer_0244
KEGG: kra:Krad_4317 hypothetical protein.
  
     0.522
Afer_0182
KEGG: dge:Dgeo_2370 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
    0.516
Afer_1696
KEGG: saq:Sare_1853 hypothetical protein.
  
     0.490
Afer_0481
TIGRFAM: lycopene cyclase domain protein; KEGG: mmi:MMAR_4809 lycopene cyclase, CrtYd.
  
     0.474
Afer_0142
PFAM: NLP/P60 protein; Lytic transglycosylase catalytic; Transglycosylase domain protein; KEGG: ace:Acel_0846 lytic transglycosylase, catalytic.
  
  
 0.467
Afer_0480
TIGRFAM: lycopene cyclase domain protein; KEGG: mjl:Mjls_5456 hypothetical protein.
  
     0.456
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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