STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0205SMART: AAA ATPase; KEGG: sco:SCO6878 ATP-binding protein. (385 aa)    
Predicted Functional Partners:
Afer_0206
KEGG: fre:Franean1_1381 type IV secretory pathway VirD4 protein-like protein.
 
  
 0.936
Afer_0204
KEGG: fre:Franean1_1340 hypothetical protein.
     
 0.870
Afer_0202
KEGG: fra:Francci3_0038 hypothetical protein.
       0.809
Afer_0604
KEGG: fra:Francci3_2361 hypothetical protein.
 
  
 0.808
Afer_0203
Hypothetical protein; KEGG: sgr:SGR_3918 putative integral membrane protein.
       0.778
Afer_0576
PFAM: TrwC relaxase; KEGG: fal:FRAAL6333 putative conjugal transfer protein TraA.
 
   
 0.750
Afer_0299
KEGG: cyt:cce_4767 hypothetical protein.
 
     0.743
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ace:Acel_0832 flagellar hook-associated protein FlgK.
       0.696
Afer_0207
Hypothetical protein.
       0.671
Afer_0209
KEGG: ace:Acel_0831 flagellar hook-associated protein 3.
       0.671
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.