STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0226PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: ace:Acel_2066 vitamin K epoxide reductase. (142 aa)    
Predicted Functional Partners:
Afer_0227
PFAM: protein of unknown function DUF929; KEGG: ace:Acel_2067 hypothetical protein.
       0.775
Afer_0999
Hypothetical protein; KEGG: nca:Noca_3830 ferric reductase domain- containing protein.
  
     0.581
Afer_1300
PFAM: FMN-binding domain protein; KEGG: ace:Acel_0050 FMN-binding domain-containing protein.
  
     0.581
Afer_1301
PFAM: Ferric reductase domain protein transmembrane component domain; FAD-binding 8 domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sma:SAV_2194 oxidoreductase.
  
     0.570
Afer_0228
PFAM: Endoribonuclease L-PSP; KEGG: dau:Daud_1470 endoribonuclease L-PSP.
       0.502
Afer_1299
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
     0.484
Afer_0380
KEGG: sen:SACE_2172 hypothetical protein.
  
     0.434
Afer_1986
PFAM: Ig family protein; KEGG: sus:Acid_0470 Ig family protein.
  
     0.433
Afer_1725
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ade:Adeh_2438 radical SAM family protein.
  
     0.424
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.