STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0229PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_7066 integral membrane protein. (301 aa)    
Predicted Functional Partners:
Afer_1844
PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase; KEGG: fre:Franean1_1258 ATPase central domain- containing protein; Belongs to the AAA ATPase family.
  
     0.680
Afer_1324
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sco:SCO2328 dipeptidase.
  
     0.614
Afer_0230
PFAM: BioY protein; KEGG: saq:Sare_4638 BioY protein.
 
     0.605
Afer_0231
PFAM: carboxyl transferase; KEGG: rca:Rcas_4102 carboxyl transferase.
  
    0.550
Afer_0287
PFAM: Negative transcriptional regulator; KEGG: sen:SACE_2130 hypothetical protein.
 
     0.476
Afer_1784
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_3296 hypothetical protein.
  
     0.452
Afer_0073
PFAM: peptidase C60 sortase A and B; KEGG: met:M446_5133 peptidase C60 sortase A and B.
  
     0.413
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
  
     0.403
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.