STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0285TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: rha:RHA1_ro02330 methylated-DNA--[protein]- cysteine S-methyltransferase. (213 aa)    
Predicted Functional Partners:
Afer_0284
PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: sus:Acid_4391 protein of unknown function DUF893, YccS/YhfK.
       0.773
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.584
Afer_1467
PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; KEGG: ace:Acel_0968 hypothetical protein.
     
 0.554
Afer_0381
PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: met:M446_4878 HhH-GPD family protein.
  
  
 0.521
Afer_1337
PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: mjl:Mjls_5132 HhH-GPD family protein.
 
   
 0.474
Afer_0290
PFAM: UspA domain protein; KEGG: sen:SACE_3386 putative universal stress protein.
   
  
 0.459
Afer_0292
PFAM: UspA domain protein; KEGG: fal:FRAAL4243 stress-inducible protein.
   
  
 0.459
Afer_1447
PFAM: UspA domain protein; KEGG: saq:Sare_1532 UspA domain-containing protein.
   
  
 0.459
Afer_0286
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; helicase domain protein; KEGG: pac:PPA1787 ATP-dependent RNA helicase.
   
   0.456
Afer_1377
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dar:Daro_0368 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
  
  
 0.413
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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