STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0332Heme exporter protein CcmA; KEGG: nca:Noca_1952 ABC transporter related; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase. (217 aa)    
Predicted Functional Partners:
Afer_0333
PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: nca:Noca_1953 cytochrome c-type biogenesis protein CcmB.
  
 0.997
Afer_0334
PFAM: cytochrome c assembly protein; KEGG: nca:Noca_1955 cytochrome c assembly protein.
  
 0.996
Afer_0191
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1989 ABC-type multidrug transport system ATPase componen.
 
   
0.898
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.782
Afer_0336
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.752
Afer_0522
Sigma 54 interacting domain protein; KEGG: sgr:SGR_3644 putative ABC transporter ATP- binding protein and permease component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.648
Afer_0337
PFAM: cytochrome c assembly protein; KEGG: nca:Noca_1958 cytochrome c assembly protein.
     
 0.644
Afer_0339
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
     
 0.624
Afer_0778
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_2202 ABC transporter related.
  
     0.616
Afer_0505
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hwa:HQ2964A ABC-type branched-chain amino acid transport systems, ATP-binding protein I.
 
     0.599
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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