STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0344PFAM: ABC-2 type transporter; KEGG: dra:DR_A0008 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Afer_0345
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2305 ABC transporter ATP-binding subunit.
 
  
 0.862
Afer_0342
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO4072 LuxR family two component system response regulator.
 
   
 0.821
Afer_0343
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO2307 two-component sensor kinase.
 
  
 0.807
Afer_0729
PFAM: nitroreductase; KEGG: kra:Krad_1547 nitroreductase.
 
    0.648
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
 
     0.570
Afer_0776
PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein.
  
     0.482
Afer_0271
TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: fal:FRAAL4424 putative reductase.
  
    0.475
Afer_0704
PFAM: nitroreductase; KEGG: sdn:Sden_2315 nitroreductase.
  
    0.475
Afer_1605
PFAM: Abortive infection protein; KEGG: mtu:Rv0658c integral membrane protein.
   
  
 0.473
Afer_0244
KEGG: kra:Krad_4317 hypothetical protein.
  
   
 0.472
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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