Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Afer_0358PFAM: glycosyl transferase group 1; KEGG: kra:Krad_0890 glycosyl transferase group 1. (405 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.819
Afer_0356
Hypothetical protein.
       0.705
Afer_0361
PFAM: glycosyl transferase group 1; KEGG: art:Arth_3461 glycosyl transferase, group 1.
 
     0.665
Afer_0360
KEGG: npu:Npun_F1793 amylo-alpha-1,6-glucosidase.
  
 
 0.652
Afer_0359
KEGG: hypothetical protein.
       0.613
Afer_1609
PFAM: LmbE family protein; KEGG: sen:SACE_0909 N- acetylglucosaminylphosphatidylinositol deacetylase.
 
  
 0.574
Afer_0835
KEGG: saq:Sare_3891 hypothetical protein.
  
     0.552
Afer_1223
PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase.
  
     0.524
Afer_0742
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_5894 glycosyl transferase group 1.
  
     0.523
Afer_0037
PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: saq:Sare_5081 myo-inositol-1-phosphate synthase.
     
 0.506
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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