STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0449Hypothetical protein; KEGG: bca:BCE_2353 triple helix repeat-containing collagen. (305 aa)    
Predicted Functional Partners:
Afer_0448
KEGG: hypothetical protein.
       0.773
Afer_0450
Putative integral membrane protein; KEGG: sma:SAV_2331 hypothetical protein.
       0.773
Afer_0451
KEGG: stp:Strop_0191 hypothetical protein.
       0.773
Afer_0452
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bha:BH4010 hypothetical protein.
       0.762
Afer_0446
PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein.
       0.558
Afer_0447
PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit.
       0.558
Afer_1064
PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 amino acid export carrier protein.
       0.530
Afer_0723
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.510
Afer_1988
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit.
       0.493
Afer_0453
PFAM: NUDIX hydrolase; KEGG: afw:Anae109_0164 NUDIX hydrolase.
       0.437
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.